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SpEED: fast computation of sensitive spaced seeds
SpEED is a program designed to compute effectively highly sensitive multiple spaced seeds.
SpEED source code
The source code can be downloaded here.
Citation
If you use SpEED, please cite:
- L. Ilie, S. Ilie, and A. Mansouri-Bigvand, SpEED: fast computation of sensitive spaced seeds, Bioinformatics 27(17) (2011) 2433 -- 2434.
- L. Ilie and S. Ilie, Multiple spaced seeds for homology search, Bioinformatics 23(22) (2007) 2969 -- 2977.
Contact
For any questions, please contact Lucian Ilie: ilie@uwo.ca
© 2011 Lucian Ilie, Silvana Ilie, Anahita Mansouri-Bigvand